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E‑Commerce in Indonesia: Payment Gateways, Taxes & Logistics

E-commerce in Indonesia

E-commerce in Indonesia is where a young, mobile-first population, numerous payment options, and a rapidly evolving tax regime all converge. For anyone building or expanding an online store, the real challenge is less “is there demand?” and more “can you speak the local payment language, keep up with Indonesia sales tax on ecommerce, and actually get orders delivered across 17,000 islands?”​  

This guide offers an in-depth overview of operating an e-commerce business in Indonesia, covering payment gateways, taxes and logistics.  

Big Picture: Why E-commerce in Indonesia is Booming? 

Indonesia is now one of the largest e-commerce markets in the world, driven by: 

  • A huge population, high smartphone penetration, and social‑commerce culture. ​ 
  • Consumers who skipped straight from cash to e‑wallets and QR codes instead of card‑heavy habits. ​ 
  • A tax authority that has moved quickly to bring online sales and cross‑border digital services into the VAT.​ 

From a practical standpoint, that means: 

  • You cannot just plug in “cards + PayPal” and call it a day; local wallets, bank transfers, and QRIS are essential. ​ 
  • You must assume VAT applies to your Indonesian sales, including many cross‑border digital subscriptions and apps sold into Indonesia. ​ 
  • “Nationwide delivery” is real, but service levels and costs vary by island and by last‑mile partner. ​ 

Company registration in Indonesia is an excellent choice for entrepreneurs worldwide.  

How Indonesians Actually Pay Online? 

Digital wallets and bank transfers are the primary form of payment in Indonesia, in both offline markets and on e-commerce platforms. This is the distribution amongst various payment methods: 

  • Digital wallets, or e-wallets, make up around 35% of all online payments, according to recent data on e-commerce payments in Indonesia from 2024–2025. 
  • Bank transfers (including virtual accounts) are around 26%. 
  • Credit cards are about 13%, debit cards about 6%. 
  • Buy Now Pay Later (BNPL) is losing to 9%, and cash‑on‑delivery is just under 10%.​ 

So, a “local‑ready” checkout for e-commerce in Indonesia normally includes: 

  • At least 2–3 major e‑wallets. 
  • Bank transfer and virtual‑account options. 
  • Cards, mainly as a trust‑building option for higher‑income segments. 
  • Optional COD or pay‑at‑store for specific categories if your logistics partner supports it. 

Indonesian Payment Methods You Must Know 

Here are the main payment methods being used by the Indonesian people. Knowing this is key to starting and maintaining an e-commerce business in Indonesia, to understand user behavior: 

1. Digital Wallets & QRIS 

Digital wallet is the default payment method for many Indonesian shoppers. Key names include: 

  • GoPay, OVO, DANA, and ShopeePay, which together cover a huge share of daily consumer payments. ​ 
  • LinkAja and others with a strong presence in bill payments and transport. 

Most are integrated into the national QRIS (QR Code Indonesian Standard) system, which lets customers pay by scanning a single QR regardless of the underlying wallet or bank. ​ 

For you, the good news is that you usually do not integrate each wallet one by one; your Indonesia payment gateway presents them as a bundle. 

2. Bank Transfers & Virtual Accounts 

Bank transfers are still a major part of e-commerce in Indonesia: 

  • Consumers are used to paying via virtual accounts, where you give them a unique account number for that order, and their transfer automatches. ​ 
  • For larger ticket items, B2B sales, or older demographics, bank transfers can outperform wallets. 

Gateways like Xendit, Midtrans, DOKU, and others specialize in bundling VA payments across multiple banks, so you do not have to negotiate bank by bank. ​ 

3. Cards and Buy Now Pay Later (BNPL) 

Cards matter, but they are not king: 

  • Card ownership and usage remain lower than in markets like Singapore or the US; credit cards account for a modest share of e-commerce volume. ​ 
  • BNPL providers (like Kredivo and others) are growing as a middle ground for shoppers who want instalments without classic credit cards. ​ 

If your target audience is urban, higher income, or crossborder, you still want Visa/Mastercard acceptance. But you should not rely on cards alone for conversion. 

4. Cashondelivery & Overthecounter payment 

Cash on delivery (COD) exists outside the biggest cities and for lower trust categories, but its share has dropped as wallets and transfers became easier and safer. ​ 

Overthecounter payments at convenience stores (Alfamart, Indomaret) and similar locations are also supported by some gateways, giving unbanked or cashheavy customers a way to pay for online orders offline.  

How to Choose an Indonesian Payment Gateway? 

An Indonesian payment gateway is your bridge into all these methods. The big criteria are: 

  • Coverage: What is the number of local methods (wallets, VAs, BNPL, QRIS, retail outlets) available? 
  • Integration: Plug-ins, SDKs, and APIs for custom stacks, WooCommerce, Shopify, etc. 
  • Pricing: FX spreads if you settle in foreign currency, settlement times, and transaction fees. 
  • Risk and Assistance: Chargeback processing, fraud detection tools, and reaction times when something malfunctions. 

Well‑known gateways and payment platforms active in Indonesia include: 

  • Xendit – Strong on local methods, easy integration, widely used by startups. ​ 
  • Midtrans – Part of GoTo; supports 25+ payment options and popular e-commerce plugins. ​ 
  • DOKU – One of the earlier players with broad coverage and a focus on fraud management. ​ 
  • iPay88 and regional PSPs – Useful if you want one contract for multiple Southeast Asian markets. ​ 

Most serious e-commerce in Indonesia lives on top of one or more of these, rather than direct integrations one by one. 

Indonesia Sales Tax One-Commerce: VAT & Digital Tax 

Indonesia does not have a separate e-commerce tax, but VAT and related rules have been extended directly into the digital space. 

Standard VAT on Goods & Services 

Indonesia operates a VAT (sometimes described as GST) system: 

  • As of January 2025, Standard VAT rate 11% is applied on taxable goods and services (with plans or discussions around a potential move to 12% in the medium term) 
  • Online sellers making taxable supplies in Indonesia are expected to charge and remit VAT once they cross registration thresholds or otherwise fall into taxable categories. ​ 

For local Indonesian ecommerce businesses, this means: 

  • If you are VAT‑registered, you charge VAT on eligible sales, file regular VAT returns, and remit the tax to the authorities. ​ 
  • Platform operators may be required to collect VAT for certain categories or for third‑party sellers in specific situations. 

VAT on Cross‑border Digital Services (“Digital VAT”) 

Indonesia has specifically targeted foreign sellers of digital goods and services to Indonesian consumers: 

  • Regulations introduced and updated under the Omnibus Tax Law require foreign providers of digital products (software, streaming, apps, online courses, etc.) supplying Indonesian customers to collect VAT on those sales and remit it, once appointed as a VAT collector.​ 
  • The VAT rate on cross‑border digital services has been set in line with the standard VAT rate (11% previously, moving to 12% for digital services from January 2025 under updated rules).​ 
  • Appointment criteria typically include revenue thresholds and/or transaction count into Indonesia; once appointed, the foreign business must register for a simplified VAT scheme, collect VAT, and file periodic returns. ​ 

If you run a SaaS or digital subscription aimed at Indonesian consumers from outside the country, this regime is your main Indonesia sales tax ecommerce concern. 

When does an E-Commerce Seller concern about Indonesian Tax Registration? 

An E-Commerce seller mostly concern itself about Indonesian tax registration broadly, consider two scenarios: 

1. Local Entity Selling to Indonesian Customers 

If you operate through an Indonesian company or have sufficient presence there, you will: 

  • Register for VAT once you cross the turnover threshold or opt in voluntarily. ​ 
  • Charge VAT on taxable sales (including most goods and many services). 
  • File periodic VAT returns and pays VAT due. 

You will also be subject to corporate income tax on profits, withholding obligations on certain payments, and potentially local taxes. 

2. Foreign Seller with No Local Entity 

If you sell physical goods from abroad into Indonesia, your main tax exposure is often at the border (import duties, VAT, and customs for the importer of record), plus any permanent‑establishment risks if your operations become too “present” in Indonesia. 

If you sell digital goods and services, the digital VAT regime kicks in once you meet the criteria and are appointed as a VAT collector. At that point, you must: ​ 

  • Register via the simplified digital VAT process. 
  • Charge the correct VAT rate on B2C sales to Indonesian customers. 
  • File and remit on the schedule set by the Indonesian tax authority. 

Ignoring this can lead to designation and public listing as a non‑compliant provider, which is not great for brand or expansion plans. 

Logistics Realities: Getting Orders Across 17,000 Islands 

Indonesian logistics is where a lot of e-commerce models either work beautifully or start leaking margin. 

National Players & Last‑mile Partners 

Several large logistics and courier companies handle-commerce deliveries nationwide: 

  • Legacy couriers and postal operators. 
  • Newer ecommerce‑focused carriers and 3PLs. 
  • Fulfillment options tied to marketplaces (Tokopedia, Shopee, etc.) 

Most serious commerce in Indonesia uses: 

  • Multiple carriers to balance cost, speed, and reliability across regions. 
  • Tiered shipping options (economy vs. express) are displayed at checkout. 
  • Cash‑on‑delivery support in selected areas, coordinated with the payment methods offered. 

Cod, Returns, and Fraud 

Cash‑on‑delivery sounds attractive in a lower‑trust, cash‑heavy environment, but: 

  • It increases failed‑delivery risk and operational cost (drivers handling cash, refused parcels). 
  • It is more vulnerable to fake orders and requires strong confirmation flows. 

By providing better discounts or other incentives such as free delivery, many brands gradually encourage loyal customers to switch to prepaid methods (wallets, transfers, and BNPL) after experimenting with COD early on. 

Warehousing & Fulfilment 

Depending on your scale, you might: 

  • Ship from a central warehouse near Jakarta or another major hub. 
  • Use 3PLs that offer warehousing plus order fulfilment in multiple cities. 
  • Combine 3PLs with marketplace fulfilment (e.g., “Fulfilled by” programs) if you also sell on big platforms. ​ 

The key is matching your order density and product type to a logistics model that does not destroy your margins with high inter‑island shipping costs. 

Marketplaces Vs Your Own Store 

In e-commerce in Indonesia, marketplaces are impossible to ignore: 

  • Platforms like Tokopedia, Shopee, Lazada, and others account for a huge share of online retail, making them the best targets for marketplace selling.  
  • They already have integrated payments (wallets, BNPL, QRIS) and nationwide logistics agreements. 

A common pattern: 

  • Start on marketplaces to prove demand and learn product market fit. 
  • Layer on your own site (Shopify, WooCommerce, custom) once you have product‑market fit and want better margins, first‑party data, and brand control. 

When you add your own store, you replicate some of the marketplace experience: 

  • Local payment methods via a good Indonesian payment gateway. ​ 
  • Reasonable delivery promises via the carriers your customers already recognize.​ 
  • Clear pricing that includes or transparently shows VAT and shipping. 

Practical Roadmap: Launching or Scaling E-Commerce in Indonesia 

Putting this together, a sensible roadmap for launching an ecommerce business in Indonesia looks like: 

  1. Understand your audience and channel mix 
  • Decide whether you will be marketplace‑first, D2C‑first, or a blend. 
  • Define which segments you are chasing (urban Gen Z vs broader mass market). 
  1. Design your payment stack around reality, not habits from home 
  • Pick a gateway that supports digital wallets (GoPay, OVO, DANA, ShopeePay), bank VAs, cards, and BNPL in one integration. ​ 
  • Optimize your checkout to show local methods first and cards later, especially on mobile. ​ 
  1. Clarify your tax obligations early 
  • If you set up locally, plan around VAT registration, VAT on sales, and corporate tax. ​ 
  • If you sell cross‑border digital services, monitor whether you cross the thresholds that trigger Indonesia’s digital VAT regime and, if so, register promptly under the simplified scheme. ​ 
  1. Build logistics for Indonesia, not for a single city 
  • Use 3PLs or marketplace fulfilment to reach across multiple islands. ​ 
  • Start with a small set of service levels (standard + express), then iterate based on delivery data and customer feedback. 
  1. Watch payment behaviour and adjust. 
  • Track which methods get the best conversion and lowest fraud. 
  • Add or down‑weight COD depending on your category and risk appetite. 

Conclusion 

E-commerce in Indonesia is not a mystery market; it is a mobile‑first, wallet‑heavy, VAT‑active environment. If you treat Indonesia payment gateways, tax, and logistics as first‑class design decisions rather than afterthoughts, you give your store a much better chance of being more than just another listing lost in a crowded marketplace. 

To know more the about E-Commerce business in India and how to run it in a compliant way, visit Enterslice.  

Helpful Questions About E‑Commerce in Indonesia

  1. What is the current size of Indonesia's E-commerce market? 

    Indonesia's e-commerce market size varies within or close to the $50 billion to $90 billion range for 2024/2025, with projections showing rapid growth towards $90-$100+ billion by 2028-2030.  

  2. Which payment methods do Indonesian online shoppers prefer? 

    Indonesian shoppers do not behave like typical card first Western customers. In practice, that means you need to offer major e-wallets (Go Pay, OVO, DANA, Shopee Pay), bank VA payments, and optionally BNPL and COD if you want to see strong conversion outside a narrow urban elite. 
     
    Recent breakdowns of e-commerce payments show digital wallets accounting for roughly a third of online transactions, bank transfers and virtual accounts in another quarter, cards a much smaller slice, and the rest spread across BNPL and cash on delivery.  

  3. Why are digital wallets and QRIS such a big deal for e-commerce in Indonesia? 

    Digital wallets are often the first “bank account” Indonesians really use day to day, because they pair perfectly with smartphones and socialcommerce flows. National QRIS (QR Code Indonesian Standard) stitches these wallets and banks together: a merchant can show a single QR and accept payments from many different apps and bank accounts behind the scenes. Fore-commerce, this translates into quick, familiar, lowfriction payments at checkout, especially on mobile, where most Indonesian shoppers browse and buy.  

  4. Do I really need an Indonesiafocused payment gateway, or will global providers do? 

    Global providers that only offer cards and a couple of international wallets will technically work, but they will not match local habits. Indonesiafocused gateways bundle multiple local methods – ewallets, bank virtual accounts, retailstore cash payments, and sometimes BNPL – into a single integration, with pricing and settlement tuned to the local market. Platforms like Xendit, Midtrans, DOKU, and regional PSPs are widely used because they make it much easier for a foreign brand or new entrant to speak the same “payment language” as Indonesian customers from day one. 

  5. How does VAT work for e-commerce and digital services in Indonesia? 

    Indonesia operates an 11 per cent VAT system on most taxable goods and services, and online sales are very much part of that net. Local ecommerce businesses that exceed the registration threshold (or opt in) are expected to charge VAT on applicable sales and file regular VAT returns.  
     
    On top of this, Indonesia has extended VAT to foreign providers of digital goods and services sold to Indonesian consumers: once appointed as a VAT collector, a foreign platform or SaaS provider must register under a simplified scheme, charge the applicable VAT rate (moving from 11 to 12 percent on digital services from early 2025), and remit it via periodic returns.  

  6. When does a foreign e-commerce or SaaS company need to register for Indonesian digital VAT? 

    If you have no local entity but sell digital products or services (like apps, streaming, online courses, subscriptions) to Indonesian customers, Indonesia’s digital VAT rules look at your turnover and transaction volume into the country.  
     
    Once you cross thresholds set by the tax authority, they can designate you as a VAT collector and publish your name on their list. From that point, you are expected to register under the simplified digital VAT regime, charge VAT on Indonesian B2C sales, and file and pay on the official schedule. Staying under the radar might work in the very short term, but for any meaningful volume, it quickly becomes a compliance and reputational risk. ​ 

  7. How does COD (cash on delivery) fit into e-commerce in Indonesia today? 

    COD used to be a dominant method for online purchases in Indonesia, especially outside the big cities, because it reduced perceived risk for first time buyers. As wallets and bank transfers became ubiquitous, COD’s share dropped but did not disappear; recent data still show single digit to low teens percentages of ecommerce transactions using COD.  
     
    It can still help with acquisition in low trust or low banking segments, but it increases operational complexity, failed delivery rates, and fraud risk. Many merchants offer COD early on but gradually push returning customers toward prepaid methods with better promos or cheaper shipping. ​ 

  8. What are the biggest logistics challenges for e-commerce in Indonesia? 

    Indonesia’s geography – thousands of islands, varying infrastructure quality, and a mix of urban megacities and remote areas – makes logistics genuinely challenging. Large national and regional couriers can reach most populated areas, but delivery times and costs vary widely by island and service level. For e-commerce operators, this means carefully choosing 3PL partners, deciding whether to centralize stock in a few hubs or decentralize it across multiple warehouses, and being honest at checkout about shipping times and costs. “Nationwide delivery” is possible, but not on identical terms everywhere. ​ 

  9. Should I start with marketplaces or my own website when entering Indonesia? 

    Most brands treat Indonesian marketplaces as their onramp. Platforms like Tokopedia, Shopee, and Lazada come with builtin traffic, integrated local payments, and readymade logistics options, which lower the barrier to entry.  
     
    Once you see consistent traction and understand what Indonesians actually buy from you, adding your own site (with local payment gateway integration and local shipping options) gives you better margins, firstparty data, and more control over brand and customer experience. In practice, many successful brands run both channels in parallel and optimize each for slightly different goals. ​ 

  10. What is a realistic roadmap for scaling e-commerce in Indonesia without getting overwhelmed? 

    A realistic approach is to think in layers rather than trying to solve everything on day one. Start by validating demand on marketplaces or a lightweight D2C site while using a strong Indonesiafocused payment gateway to offer wallets, bank VAs, and cards from the start.  
     
    As volume grows, invest in better logistics – multiple carriers, perhaps a 3PL warehouse in or near Jakarta, and clearer shipping SLAs across islands. In parallel, clarify your tax position: register for VAT if you operate locally, or monitor digital VAT thresholds if you sell crossborder digital services. Finally, keep watching how Indonesian customers actually pay and receive orders, and adjust your payment mix, COD policy, and fulfilment model based on real data rather than assumptions imported from other markets. ​ 

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